{
 "id": "fasta-format",
 "name": "FASTA format",
 "category": "text",
 "identifiers": {
  "extensions": [
   "fa",
   "fasta"
  ],
  "mime": [
   "chemical/seq-aa-fasta",
   "chemical/seq-na-fasta",
   "text/plain"
  ],
  "wikidata": [
   "Q1593782"
  ]
 },
 "status": "writable",
 "summary": "file format used to store nucleotide or amino acid sequences",
 "tools": [
  {
   "name": "AlleleID",
   "url": "http://www.premierbiosoft.com/bacterial-identification/index.html",
   "reads": true,
   "writes": false
  },
  {
   "name": "Application Mapper",
   "url": "http://bio.math.berkeley.edu/amap/download/",
   "reads": true,
   "writes": true
  },
  {
   "name": "Beacon designer",
   "url": "http://www.premierbiosoft.com/molecular_beacons/index.html",
   "reads": true,
   "writes": true
  },
  {
   "name": "Bioconductor",
   "url": "http://www.bioconductor.org/",
   "reads": true,
   "writes": false,
   "license": "Artistic License",
   "open_source": true
  },
  {
   "name": "BioExtract",
   "url": "https://www.bioextract.org/query/index.jsp",
   "reads": true,
   "writes": false
  },
  {
   "name": "bioSyntax",
   "url": "http://bioSyntax.org",
   "reads": true,
   "writes": false,
   "license": "GNU General Public License, version 3.0",
   "open_source": true
  },
  {
   "name": "Clustal",
   "url": "http://www.clustal.org/omega/",
   "reads": true,
   "writes": false,
   "license": "GNU General Public License, version 2.0",
   "open_source": true
  },
  {
   "name": "CodonCode Aligner",
   "url": "http://www.codoncode.com/aligner",
   "reads": true,
   "writes": true,
   "license": "proprietary license"
  },
  {
   "name": "EMBOSS",
   "url": "http://emboss.sourceforge.net/",
   "reads": true,
   "writes": true,
   "license": "GNU General Public License / GNU Lesser General Public License",
   "open_source": true
  },
  {
   "name": "FastPCR",
   "url": "http://primerdigital.com/fastpcr.html",
   "reads": true,
   "writes": false
  },
  {
   "name": "GeNMR",
   "url": "http://www.genmr.ca/index.php",
   "reads": true,
   "writes": false
  },
  {
   "name": "GenoCAD",
   "url": "http://www.genocad.com/",
   "reads": true,
   "writes": true,
   "license": "Apache Software License 2.0",
   "open_source": true
  },
  {
   "name": "GENtle",
   "url": "https://www.wikidata.org/wiki/Q5513179",
   "reads": true,
   "writes": false,
   "license": "GNU General Public License, version 2.0 or later",
   "open_source": true
  },
  {
   "name": "Geworkbench",
   "url": "http://www.geworkbench.org",
   "reads": true,
   "writes": false,
   "license": "open-source license",
   "open_source": true
  },
  {
   "name": "Integrated Genome Browser",
   "url": "http://igb.bioviz.org",
   "reads": true,
   "writes": false,
   "license": "Common Public License",
   "open_source": true
  },
  {
   "name": "Jalview",
   "url": "http://www.jalview.org/",
   "reads": true,
   "writes": false
  },
  {
   "name": "Mathematica",
   "url": "https://www.wolfram.com/mathematica/",
   "reads": true,
   "writes": true,
   "license": "proprietary license"
  },
  {
   "name": "MEME suite",
   "url": "http://meme-suite.org/",
   "reads": true,
   "writes": false
  },
  {
   "name": "MUSCLE",
   "url": "http://www.drive5.com/muscle",
   "reads": true,
   "writes": true,
   "license": "public-domain software",
   "open_source": true
  },
  {
   "name": "Newbler",
   "url": "https://www.wikidata.org/wiki/Q7016954",
   "reads": true,
   "writes": false
  },
  {
   "name": "OpenBabel",
   "url": "https://openbabel.org",
   "reads": true,
   "writes": false,
   "license": "GNU General Public License, version 2.0 or later",
   "open_source": true
  },
  {
   "name": "Q1036510",
   "url": "https://biojava.org/",
   "reads": true,
   "writes": true,
   "license": "GNU Lesser General Public License",
   "open_source": true
  },
  {
   "name": "Q116701580",
   "url": "https://www.wikidata.org/wiki/Q116701580",
   "reads": true,
   "writes": false,
   "license": "GNU General Public License, version 3.0",
   "open_source": true
  },
  {
   "name": "Q141222842",
   "url": "https://www.snapgene.com",
   "reads": false,
   "writes": true
  },
  {
   "name": "SAMtools",
   "url": "http://htslib.org/",
   "reads": true,
   "writes": false,
   "license": "Expat license",
   "open_source": true
  },
  {
   "name": "Stemloc",
   "url": "http://biowiki.org/StemLoc",
   "reads": true,
   "writes": false
  },
  {
   "name": "T-Coffee",
   "url": "http://tcoffee.org",
   "reads": true,
   "writes": false,
   "license": "GNU General Public License",
   "open_source": true
  }
 ],
 "projects": [
  {
   "name": "Wikidata Q1593782",
   "url": "https://www.wikidata.org/wiki/Q1593782",
   "kind": "wiki"
  },
  {
   "name": "File Formats Wiki",
   "url": "http://fileformats.archiveteam.org/wiki/FASTA_and_FASTQ",
   "kind": "wiki"
  }
 ],
 "provenance": {
  "sources": [
   "wikidata"
  ]
 },
 "updated": "2026-10-20"
}